rs222020811 SNP Detail

Summary

• ID
  rs222020811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:86982301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCCCTTCT TCAGGCTTCA GACACCAATA
  TGTATTCCTC GGGATGTGGC TAGCTACACT CATTTATGTC AGAGGCTTGT GCTATGGCAG
  TCCCCAGGCT TGTGGTACAG TGCACAAGGA CACTTAATGA AACCTCCACA CAAGTGCATG
  Y
  AGAAGGGCCC TGTTTTTTTT TAATCTGGGA AGACAGCTCT CCCCGGTGCT TCACCAAGAG
  CCGGTCATAA ACTCTAGGAC AGTAGTCTTC ATGTAGGTTC CAGAAGTCCC TCAAGGGCCA
  CCCACGGGGC ACCTTCTCTG CCTTCATCAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321199698	CHEV_4_86709968	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222020811					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86982301 () rs orientation: forward

Symbol	Name	Function Class
Rr594860	regulatory region 594860	789 bp distal
Rr594861	regulatory region 594861	1286 bp proximal
Slc24a2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	Intron