rs222018566 SNP Detail

Summary

• ID
  rs222018566
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77647932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAAGGAA ACATAATTTG
  AAGGGCTCAG TCTTCTAAGA TGACTTCTTC GGGAAGAAAT TCAAGAGTAA CAAATGACAA
  GGGAACTGTG GAAGGCAGCA AAGACTGAAA AAAAAAAACA GATGACTCGA CTTTAAAATA
  TTTTTCTTTG GATCTTGTCT TAGATGATTG ACACAAAGGC CATAAATAAT TAATCCGGCA
  K
  CTGTTAATGT CTTGGCATAG TGTCCGGAGT AAATATCTTC GAGTCCAGCC AAAGCTAGTG
  CTGCTTCCGG GGTGGGTTTG AGATCTGATG AATGCACACT CACTGCATTC TGGAGCCTTC
  CGAAGGAGCA GCTTGCTTTT TTTTTTAAAT CCACCTTGGA ATGTCAGCTT ATTGCAGGCG
  CCAGCACCTG AGGTAACCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354554532	MGP_WTSI_2_77655645	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222018566					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354554532	MGP_WTSI_2_77655645	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77647932 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11837	CpG island 11837			260 bp distal
Rr559844	regulatory region 559844			783 bp distal
Rr559845	regulatory region 559845			within coordinates
Rr559846	regulatory region 559846			579 bp distal
Rr559847	regulatory region 559847			510 bp distal
Tssr24865	transcription start site region 24865			960 bp upstream
Tssr24866	transcription start site region 24866			897 bp upstream
Tssr24867	transcription start site region 24867			861 bp upstream
Tssr24868	transcription start site region 24868			840 bp upstream
Tssr24869	transcription start site region 24869			773 bp upstream
Tssr24870	transcription start site region 24870			657 bp upstream
Tssr24871	transcription start site region 24871			126 bp upstream
Tssr24872	transcription start site region 24872			94 bp upstream
Tssr24873	transcription start site region 24873			80 bp downstream
Zfp385b	zinc finger protein 385B			mRNA-UTR
				Noncoding-Transcript-Variant