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rs222009369 SNP Detail
Summary
  • ID
    rs222009369
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:106455301 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGGGGGGAC TCAGAAAAGG
    TTGAGGCGCG CCTCCGAGCT ACTCGGGAGC GCGCCCCGGG GCTCCGCCCA GGCTCCTACA
    GTGGGCCTGT TCTGCACTTT GAGGCTGGAG CTGGCTGGTC GGGGACAGGA AAGAAGGTGA
    GTGGGAGGGG GAAAAGTGCC TGGCCTGGCG CTCGGCAGGT TTTCTACTTG GGTGCTGTGT
    S
    GAAGTGTGGT TCGCAAGCCA AGAGCGAGGG CACAACGCGA GCCCCCTTGG TCCCACGGGC
    GCGCGAGCCA CGCGAACCTC GGTAGCTTCA CCTGGTTCCG TGAACTTCGT GACACCCACG
    ACTAGAGTCG CGAGCCAGCT CCGGGAACCC ACGAATCACG GGAGATGACA ACTAGGCTGA
    GGTCTCCGCG TCCTACTTTT                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss359130136 MGP_WTSI_3_106350903 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C G C C C G G G C C C C C G C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222009369 SNP C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C G C C C G G G C C C C C G C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359130136 MGP_WTSI_3_106350903 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:106455301 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cept1 choline/ethanolaminephosphotransferase 1 183 bp upstream
Cpgi13666 CpG island 13666 within coordinates
Dram2 DNA-damage regulated autophagy modulator 2 Intron
mRNA-UTR
Rr375539 regulatory region 375539 within coordinates
Rr582855 regulatory region 582855 414 bp distal
Rr582856 regulatory region 582856 103 bp distal
Rr582857 regulatory region 582857 within coordinates
Rr582858 regulatory region 582858 1069 bp proximal
Tssr31115 transcription start site region 31115 271 bp downstream
Tssr31116 transcription start site region 31116 247 bp downstream
Tssr31117 transcription start site region 31117 97 bp downstream
Tssr34980 transcription start site region 34980 1813 bp upstream
Tssr34981 transcription start site region 34981 407 bp upstream
Tssr34982 transcription start site region 34982 392 bp upstream
Tssr34983 transcription start site region 34983 262 bp upstream
Tssr34984 transcription start site region 34984 204 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory