rs222007581 SNP Detail

Summary

• ID
  rs222007581
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:41525490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGTGTCT CAGCAGTTTC
  TTTGGACTCC TGTGGTTACT GACATTCCTA CTGGTCTGAA AAGGCAAACA GAATGACTAA
  TCTGCCTTCT TGTCAAAAAT TCTTCTTCCT CCTGTGTACT TTAGATCCTC CAATGAGTCA
  TTTGTCTGAA GGGCAATGAC TGGACTCCAG CAGGATAAAG ACAGAGAAAG AAAAATTACC
  R
  CTAACAATAA CCCCACCCAG TATAGGACAG AAGCTAAGCA GACCTATTTA ATTCTCAATT
  ACAGAGTCCA GTTCTTTTTG TTTCAACTTC AGATTTTATC TGTATCTCTC CTCAATATCT
  CTGGCTTATC TTGTTTGAAA GCTTTACGTG AAGATCTGTT AAACTCTTCA GGTCTAGCCT
  GGGGTCTTAG ATAGGACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368070505	MGP_WTSI_6_41498555	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222007581					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368070505	MGP_WTSI_6_41498555	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:41525490 () rs orientation: forward

Symbol	Name	Function Class
Gm68268	predicted gene, 68268	1845 bp downstream
Rr149356	regulatory region 149356	1311 bp proximal
Tcrb	T cell receptor beta chain	within coordinates
Trbc2	T cell receptor beta, constant 2	375 bp downstream
Tssr1822	transcription start site region 1822	1035 bp downstream
Tssr55950	transcription start site region 55950	1979 bp downstream
Tssr55951	transcription start site region 55951	1248 bp downstream
Tssr55952	transcription start site region 55952	1178 bp downstream
Tssr55953	transcription start site region 55953	1171 bp downstream
Tssr55954	transcription start site region 55954	1121 bp downstream
Tssr55955	transcription start site region 55955	1092 bp downstream
Tssr55956	transcription start site region 55956	1048 bp downstream
Tssr55957	transcription start site region 55957	762 bp downstream