rs222007186 SNP Detail

Summary

• ID
  rs222007186
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28077227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTGCAGG GGTCTGGGGA
  GGCCCAAACA CCCCTGCCTC AAAGACAGGT GAGTCTGACC CCCCCAGGCT GCTGCCGCTG
  CTGGCGTAGT CATCAGGATC GGATCCCAGA GAGTGGGCAG ATGGGCTCCG AGCCAGGCCA
  CCCAAGGGCC CCCAGATGGT GCTGGGGGTA GTAGACCTTC GGCAGGAGGG GCAACAGGCC
  K
  GGTTAGGGTC TCTTCGAGTC ACAGGGGTCC CAGGGGCAGC AGAGAAGGCA GAAGGGGAAA
  GTGGAAGATC CCCAGGGGGC GGTGGGGAGC TGGAAGGCGA AAAGGAACAA GAGGACAGGG
  AAGGGCCAGA AAAGCCTGGA GGTGGCGGCG AGCTTCTGCG GCCTGAGGGC AAGCCGGAGA
  AGCTGATGCT TTGTCGCAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858522	MGP_WTSI_7_29162821	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222007186					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858522	MGP_WTSI_7_29162821	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28077227 () rs orientation: forward

Symbol	Name	Function Class
Gm44710	predicted gene 44710	1178 bp upstream
Gm73785	predicted gene, 73785	1128 bp upstream
Rr380568	regulatory region 380568	1016 bp downstream
Rr400209	regulatory region 400209	1870 bp downstream
Rr400210	regulatory region 400210	1408 bp upstream
Rr644238	regulatory region 644238	1740 bp distal
Rr644239	regulatory region 644239	638 bp distal
Rr644240	regulatory region 644240	131 bp proximal
Rr644241	regulatory region 644241	688 bp proximal
Rr644242	regulatory region 644242	1189 bp proximal
Rr644243	regulatory region 644243	1443 bp proximal
Tssr2163	transcription start site region 2163	1554 bp downstream
Tssr2164	transcription start site region 2164	1687 bp downstream
Tssr2165	transcription start site region 2165	1730 bp downstream
Tssr65461	transcription start site region 65461	1239 bp downstream
Tssr65462	transcription start site region 65462	1064 bp downstream
Tssr65463	transcription start site region 65463	307 bp downstream
Tssr65464	transcription start site region 65464	194 bp upstream
Tssr65465	transcription start site region 65465	1550 bp upstream
Tssr71490	transcription start site region 71490	808 bp upstream
Tssr71491	transcription start site region 71491	711 bp upstream
Tssr71492	transcription start site region 71492	633 bp upstream
Tssr71493	transcription start site region 71493	583 bp upstream
Tssr71494	transcription start site region 71494	548 bp upstream
Tssr71495	transcription start site region 71495	518 bp upstream
Tssr71496	transcription start site region 71496	171 bp upstream
Tssr71497	transcription start site region 71497	63 bp downstream
Tssr71498	transcription start site region 71498	121 bp downstream
Tssr71499	transcription start site region 71499	214 bp downstream
Tssr71500	transcription start site region 71500	247 bp downstream
Tssr71501	transcription start site region 71501	265 bp downstream
Tssr71502	transcription start site region 71502	305 bp downstream
Tssr71503	transcription start site region 71503	341 bp downstream
Tssr71504	transcription start site region 71504	369 bp downstream
Tssr71505	transcription start site region 71505	385 bp downstream
Tssr71506	transcription start site region 71506	404 bp downstream
Tssr71507	transcription start site region 71507	445 bp downstream
Tssr71508	transcription start site region 71508	467 bp downstream
Tssr71509	transcription start site region 71509	505 bp downstream
Tssr71510	transcription start site region 71510	584 bp downstream
Tssr71511	transcription start site region 71511	623 bp downstream
Tssr71512	transcription start site region 71512	678 bp downstream
Tssr71513	transcription start site region 71513	1294 bp downstream
Tssr71514	transcription start site region 71514	1423 bp downstream
Tssr71515	transcription start site region 71515	1445 bp downstream
Zfp36	zinc finger protein 36	Coding-NonSynonymous