rs221997972 SNP Detail

Summary

• ID
  rs221997972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107136936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agcctgcct ctgcatcccc accactgagg
  ccataggcat tcatcgtcac acccagctgc tgtggttgtg ttttgggTTT TGTTtttttg
  tttttttttt tggttttgtt tttgtttttg tttttTAACA TGGGAATCAA AATCTTGTCC
  Y
  GCTTGCCCAG TCCAGGTAGA CAAGACAAGC TAGGCTGGCA GCCATGATGA TACTTGTTCA
  ATATGAAGTC CACACTCTAC ATAGACTGGA GGGTTAGCTA ATGGGAGCTA CCTCTCTTTG
  CAAAGCAGTG TTAATTTTTC GTTATTTGTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864771	CHEV_3_107032538	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221997972					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107136936 () rs orientation: forward

Symbol	Name	Function Class
A630076J17Rik	RIKEN cDNA A630076J17 gene	994 bp upstream
D3Tem2	DNA segment, Chr 3, Temple 2	1824 bp proximal
Rr582941	regulatory region 582941	107 bp distal
Rr582942	regulatory region 582942	504 bp proximal
Rr582943	regulatory region 582943	1005 bp proximal
Tssr31190	transcription start site region 31190	836 bp upstream
Tssr31191	transcription start site region 31191	988 bp upstream