rs221991245 SNP Detail

Summary

• ID
  rs221991245
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164248470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGCTCTT TAAGAAGTGA
  CATTGGAGCT GATGTACCAG TGCTGAGATA GAGCCAGGCA TGGGAAAACT CCAGGAAGCA
  TTCTAACTGG AAGCAATAGA AAACGCAAGG ACCTCAAGGC TATATACTCA GTACTGTAAG
  AGGATGAAAG GGGGAGACTG GTCAGAAGAG GGGGACGTTA GAGAAGATGA CAGGAGAAGC
  W
  GTGTCCAGGT CATGTGAGGA TTTGGGATTT TAAACCACAA GGGATGTTGA TAAGAGGACA
  TCACAATTTG ATTCATTTTC ATTATTATTA ATAATATCGT TTATTTTGTT ATATTTTGGG
  GGGGATAAGA CAGACTCTAA CTCTAGCTCA GGCGGAACCT ATACCAATCC TCCTGCCTCA
  GAGGCCCCAT CCCTTCCGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605782	CHEV_2_164232050	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221991245					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164248470 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12657	CpG island 12657			1552 bp distal
Cpgi12658	CpG island 12658			1292 bp proximal
Matn4	matrilin 4			1390 bp upstream
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
Rr569598	regulatory region 569598			1949 bp distal
Rr569599	regulatory region 569599			1446 bp distal
Rr569600	regulatory region 569600			1157 bp distal
Rr569601	regulatory region 569601			1126 bp proximal
Rr569602	regulatory region 569602			1348 bp proximal
Tssr21580	transcription start site region 21580			1253 bp downstream
Tssr27451	transcription start site region 27451			1929 bp upstream
Tssr27452	transcription start site region 27452			1726 bp upstream
Tssr27453	transcription start site region 27453			1693 bp upstream