rs221970534 SNP Detail

Summary

• ID
  rs221970534
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135435680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACTTGTGT CCTCCAAAAG GAGACATGGA
  GAAAGAGGTC TGGGGCATAC AGCttccaga ggacaccata aggaagtggg ggatcaaggc
  agggagaaga aggccagcca gtcaacgtat aaaattaaac aggtccctga tactggagat
  K
  gggcctccac atccctggga atcttctgAT GTCCGTGCCT GGCCCATCAG ATTTGATTGT
  CTGCAAAGAC AGGAGCTGGG GGACGCATGC TATgtggagg ttgcctttgg tttggttttg
  aacctggggt cttacacgtg ctatgcaagc                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321352842	CHEV_4_135264284	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221970534					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135435680 () rs orientation: forward

Symbol	Name	Function Class
Ifnlr1	interferon lambda receptor 1	188 bp downstream
Rr602109	regulatory region 602109	1979 bp distal
Rr602110	regulatory region 602110	588 bp proximal
Rr602111	regulatory region 602111	657 bp proximal
Rr602112	regulatory region 602112	869 bp proximal
Rr602113	regulatory region 602113	1101 bp proximal
Rr602114	regulatory region 602114	1376 bp proximal