rs221946430 SNP Detail

Summary

• ID
  rs221946430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134640417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATTCCCA ACAACTACAT
  GAAGGCTCAC AACCATCTGT ACAGCTGCAG TGTACTCGTA TACATAAAAT AGATAAATAA
  ATCTTTAAAA AAAAAAGAAG AAGAAAAAGA AAACATCACA TAACCTAAAC CGTCTATACA
  GCCACAGATA AACACATGGA GAGCTAAGGT GTCACAAGGA CTTACTAGAA CGCCAGCAGC
  R
  ATGGAGGCGA TCGTGTTCCG CTTCTCCCCC CAGTCCATGC ACTCAGAGCA CCTCGAGCCT
  TCTAGAAATC CAGACATCTT TTCAGGTCAC TAAACCAAAA CCATCACAGT TAAACAAGGT
  CCTTCGGTTT TCTTGTTTCA AAGCTGGCTG TGTTTCTGCA AAATAACAGC TGGATGATAA
  CCTAACACAA GTTACAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321349931	CHEV_4_134469021	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221946430					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134640417 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15052	CpG island 15052			1453 bp proximal
Rr601858	regulatory region 601858			43 bp proximal
Rr601859	regulatory region 601859			541 bp proximal
Rr601860	regulatory region 601860			1062 bp proximal
Rr601861	regulatory region 601861			1899 bp proximal
Tmem50a	transmembrane protein 50A			Coding-Synonymous
				Intron
				mRNA-UTR
Tssr39578	transcription start site region 39578			1983 bp upstream
Tssr43943	transcription start site region 43943			1834 bp downstream
Tssr43944	transcription start site region 43944			1869 bp downstream
Tssr43945	transcription start site region 43945			1904 bp downstream