rs221926112 SNP Detail

Summary

• ID
  rs221926112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156148069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATGGAG CCTAGGATGG
  TCATCCAAGT CCAGATCCGG CTTCATGGTA GGGTTCAGTA GGCCTAGAAC AGTTCATCTC
  TTTCCCATAG ATAGAAAAAA GATCCTGCCA GGCAGTGGTG GCTCACACCT TTAATCCCAG
  CACTTGGCAG GCGGATTTCT GAGTTCGAGG CCAGCCTGGT CTACAGAGTG AGTTCCAGGA
  Y
  AGCCAGGGCT ACACAGAGAA ACCCTGTCTT GAAAAACAAA ACAAACAAAC AAACAAACAA
  CAGCAGAAAG ATCCTACTAC CTTGCTGATG CCTAGGTGGT GATGACCAGT TCTGAGCACC
  CAAATGAATG GGCAGTCTGC GTTGTAGCAG GGTTCACCAC CTACCATGTT AAAAAGCATA
  GGGAGGAGGC CTGGGACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445033	CHEV_4_155437721	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221926112					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156148069 () rs orientation: forward

Symbol	Name	Function Class
Gm52714	predicted gene, 52714	662 bp upstream
Rr377474	regulatory region 377474	276 bp upstream
Rr606657	regulatory region 606657	260 bp proximal
Rr606658	regulatory region 606658	745 bp proximal
Tssr40789	transcription start site region 40789	727 bp upstream