rs221902519 SNP Detail

Summary

• ID
  rs221902519
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52707259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAACGAAC AAACTGCATG
  TATGAGGATG AGATTAAAGT GCGTTGTTAT TCTGGCTGAA AGAACTCTCC CGTGAAAGAG
  CGCACACTCT AAGATCCTAA CTCTAAAAAG CCCTGGGAAA GGCAAACTAA TCCCTGGTGG
  CAGAACCAGG GTAGAGGCTG CTCTTCCAGG TGTGAGGAGA TAGGACTGAC TGGGAGGGAC
  W
  CCATGGGAAT TTCTTAAGCA GAAGAAGAAC GTTCTATTTC TTGACAAGGA TGCGGATTAT
  GTGGGAGGTA AGCATTGCCA GAACTTATTG ATAGTATGGA GTTAAGATCT ACAGATTTTT
  ATTGTATAGA ATATAAGTTA TGTATACTAC ATTGAGGTAT CCATTATACC ACAATAAAAT
  TTTAGAAGTT TCATAAATCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765235	CHEV_3_52603760	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221902519					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52707259 () rs orientation: forward

Symbol	Name	Function Class
Rr576585	regulatory region 576585	1701 bp distal
Rr576586	regulatory region 576586	792 bp proximal