rs221826430 SNP Detail

Summary

• ID
  rs221826430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137337711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAAGGTTG AGAAGAACCG
  TGAGGTGAGG ACAGACCTGA GGTGGACAGG AGAGTCAGGA GTTCAAAGCC AGCTTCAGCT
  ACTTTAGGGA GAGACTGTTT ATGTTGCATA AAGAGTTTGG TTTGACCTGT AGCTCCGTAG
  CAGAGTTTGC TTAGCATGTT GAATGTCAGC AGCGCGCGCG CACGCACACA CGCACACACA
  Y
  GTTGGTGTTA AATCTGTCTT ACTTGAAGTG GGAGAAATGA GGAAGGAGGG AAGGACTCGA
  GCTACTTTTC TTGTCCTGAC CTCTGACATA ATTAGGGAGA AGCAACAGCT GGCTGGGGAA
  GCTGCAGAGG GCGGGTGTGG GGGGGAGGGG GAGGAGGATG ATGGCGGCGT TCCCCGTTGG
  ATGGAAGCTG CAGAGGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss363419644	MGP_WTSI_4_137166315	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C	C	T	C	T	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs221826430					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C	C	T	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363419644	MGP_WTSI_4_137166315	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137337711 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr602660	regulatory region 602660			268 bp distal
Tssr39763	transcription start site region 39763			271 bp upstream
Tssr39764	transcription start site region 39764			1550 bp upstream
Usp48	ubiquitin specific peptidase 48			Intron
				Noncoding-Transcript-Variant