rs221825137 SNP Detail

Summary

• ID
  rs221825137
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152515521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGTGCAG TGCCACGCTA
  CAGCCTGGCA ATGCCGACGT CCTGGAGGAT GGTTGGGGTG CGGCGAGAGG TGGGGGTCCT
  GCCCCCTCCC ATGGTCTCCC CTTTGCTGCC TTTGTGTCAG AGGCCTGGGT CTTCTGAGCC
  ACAGGTAGGA AAGAGCTGGC TGGGCTGTTC TTTATTTGAA TGCCAGGCAC ACGGCTCACA
  Y
  GGCTTGTCCA CCCCATTCCA CGCTGTGTCT GCAGTGGACA GCGAGGGCAC CTGTGGCATG
  TGGCCACTGC CACAGTGGAG AGGCACACAG AGATGTCCTT CCCCTCCATG CGGGTGCACA
  CTATGTGGCT ATATGTACAG ATCGCAGCTG CCTATGCACG GAAGGTTCTA GAAATCTGTT
  TGGGCACACA ATGCACTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434651	CHEV_4_151805173	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221825137					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152515521 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnab2	potassium voltage-gated channel, shaker-related subfamily, beta member 2			Intron
				Noncoding-Transcript-Variant
Rr605873	regulatory region 605873			1322 bp proximal
Rr605874	regulatory region 605874			1404 bp proximal
Rr605875	regulatory region 605875			1451 bp proximal