rs221818348 SNP Detail

Summary

• ID
  rs221818348
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114945895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGTGAGT CTCTGTTTCA
  CGTGAGGTGG GGTCCCAGGG TCTGGCTTGG TGGGTCGGAA ACAAGAAGTG AGTGGAGGGG
  CTGATGTAAG GAAAGCGGGC AGCTGAGCTT TCCCTGAGTC TTTTGTCCAC AGATGTTTTC
  CTCTGGCTCC CTGAGCCAGC TAGAGCCTGT CTCAAGCCAA CTGTCAGTCT TTCAAGAAGC
  Y
  CCACCCACTG GGCTCATTCA AGGCAGGGCT GAAAATGTCA CACCTTTCCC TGGGAGCCTA
  GCCCCATTGC CAGGAAAGGT GAGCTCAGAA GAAGACTTCT GAGGCAGAGT GAGTGTCGGA
  GAAGGCGGGG ACTTTCCCCT TACTTCCCCA GTTCCCTGGG CCCACCCCCA GAACTGGTTT
  CTAAAGGGGT ACCTTAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362928782	MGP_WTSI_4_114761303	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221818348					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362928782	MGP_WTSI_4_114761303	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114945895 () rs orientation: forward

Symbol	Name	Function Class
Pdzk1ip1	PDZK1 interacting protein 1	10 bp upstream
Rr597713	regulatory region 597713	1379 bp distal
Rr597714	regulatory region 597714	within coordinates
Tssr38446	transcription start site region 38446	36 bp upstream
Tssr38447	transcription start site region 38447	81 bp upstream
Tssr38448	transcription start site region 38448	165 bp upstream
Tssr38449	transcription start site region 38449	207 bp upstream
Tssr38450	transcription start site region 38450	216 bp upstream
Tssr38451	transcription start site region 38451	292 bp upstream
Tssr38452	transcription start site region 38452	457 bp upstream
Tssr38453	transcription start site region 38453	1462 bp upstream
Tssr38454	transcription start site region 38454	1470 bp upstream
Tssr38455	transcription start site region 38455	1490 bp upstream