rs221787624 SNP Detail

Summary

• ID
  rs221787624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109137899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGC CGCCGCCCCC GCCGCGGGTC
  Y
  CCGCGCCGCT CTCCTCCAGG TCCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321253764	CHEV_4_108953307	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221787624					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109137899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14571	CpG island 14571	within coordinates
Eps15	epidermal growth factor receptor pathway substrate 15	Intron
Gm40225	predicted gene, 40225	460 bp upstream
Rr398389	regulatory region 398389	392 bp downstream
Rr597299	regulatory region 597299	571 bp distal
Rr597300	regulatory region 597300	280 bp distal
Rr597301	regulatory region 597301	within coordinates
Rr597302	regulatory region 597302	236 bp distal
Rr597303	regulatory region 597303	68 bp proximal
Tssr38334	transcription start site region 38334	387 bp downstream
Tssr38335	transcription start site region 38335	376 bp downstream
Tssr38336	transcription start site region 38336	302 bp downstream