rs221783672 SNP Detail

Summary

• ID
  rs221783672
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:7854107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATTCATT CCTTTTAAAC
  TTCATAGTAT TGGTATATTT TGATATTAGA TATTTAAACC TTGTGGGTTT TACACAGACT
  AAATACAATG ATATAAATAA AACATATGCT GGACTACGTA ATAACTAAAT AAAACCTCTT
  ATGAGTTCCT GCTATAAGAA AGATAATGTA TTAAGCAAAG AGTCCTACAA CCCCCCCCCC
  M
  AAAAAACAGC CAAACAGAAG CAGGTTGCTT ATATGATAGG CAAAAGGACT CCCTTAAAAT
  GTAACAGAAG ATACCACAAA GAATAAAGGG AACCAATACC ACAAGGGGCA CTCAGTAGTT
  CAGTCAAAAT ATCCTGAGAT ATAGCTGAAA GAATTGTGTG TTTAAATGAT AAATGAAGAG
  TTGAGACAAT TTGATTTCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss360512795	MGP_WTSI_4_7781254	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs221783672					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360512795	MGP_WTSI_4_7781254	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:7854107 () rs orientation: forward

Symbol	Name	Function Class
Rr588479	regulatory region 588479	1521 bp distal
Rr588480	regulatory region 588480	399 bp distal
Rr588481	regulatory region 588481	549 bp distal