rs221652091 SNP Detail

Summary

• ID
  rs221652091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113598675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gtatgtatg tgtatgtatg tactatcagg
  tatgtgtgtg cgcaaactgc atgcctggta cccacgaaag tgtccgatcc cctgggactg
  gggtcccata tggttgtgag ctgccaatca aaccagagtc gtctgcaaga gcagccagtg
  Y
  tcctaaccaa ggagccaact ctccaCCGta tttttatttt taaatcatgt atgtatgttt
  gtttgtgtat gggggcgggg gggggcttgc acatgtctgt ggaggtcaga agagggcatt
  gaactcccta gacctggagt gacaggcagt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911126	CHEV_6_113571708	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221652091					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113598675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	1957 bp proximal
Rr636555	regulatory region 636555	1867 bp proximal
Tssr62461	transcription start site region 62461	1814 bp downstream