rs221652040 SNP Detail

Summary

• ID
  rs221652040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144113669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTATGCACT TTTAATGTTC TTGTGGGTTT TTTTGTTTTT
  GTTTTTTGGT TTTTTGAGTC AGGGTTTCTC TGTGTAGCCC TGGCTGTCCT GGAACTCACT
  Y
  TGTAGACCAG GCTGGCCTCT AACTCAGAAA TCCACCTGCC TCTGCCTCCC AAGTGCTGGG
  ATCAAAGGCG TGCGCCACCA CACCCGGCTC TTGTGTGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355978247	MGP_WTSI_2_144097485	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	C	C	C	T	T	C	C	T	T	C	T	T	T	T	C	C	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221652040					SNP	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	C	C	C	T	T	C	C	T	T	C	T	T	T	T	C	C	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355978247	MGP_WTSI_2_144097485	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144113669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12351	CpG island 12351	384 bp distal
Mgme1	mitochondrial genome maintenance exonuclease 1	Intron
Rr397362	regulatory region 397362	697 bp downstream
Rr397363	regulatory region 397363	32 bp downstream
Rr566425	regulatory region 566425	1188 bp distal
Rr566426	regulatory region 566426	798 bp distal
Rr566427	regulatory region 566427	101 bp distal
Snx5	sorting nexin 5	956 bp upstream
Tssr20524	transcription start site region 20524	1158 bp downstream
Tssr20525	transcription start site region 20525	1077 bp downstream
Tssr20526	transcription start site region 20526	800 bp downstream
Tssr20527	transcription start site region 20527	694 bp downstream
Tssr20528	transcription start site region 20528	116 bp downstream
Tssr26594	transcription start site region 26594	1681 bp upstream
Tssr26595	transcription start site region 26595	1263 bp upstream
Tssr26596	transcription start site region 26596	1216 bp upstream
Tssr26597	transcription start site region 26597	949 bp upstream
Tssr26598	transcription start site region 26598	902 bp upstream
Tssr26599	transcription start site region 26599	886 bp upstream