rs221647622 SNP Detail

Summary

• ID
  rs221647622
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121339303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCACCTCC CAAGTCTGGG
  GTGACAGGCA GGCGGGATTC ACCGTGCTTA GCTGTTCCCT TTATTATGAT TGAAAACTGT
  ATAGCAGTGG TGAGGCGTAA TTTTCTCATA GTTGTATTGC AAGAAAGTGG GCAGAAGTAA
  CGGCTGAATG TTTCTTGTTG GTGTGCACTC GGGGTGAGTG CACACCTCGG TGGTGGTGGT
  G
  GTGGTGGGAG TTCATTTGTG TACATACATG CACATAGAGG TTCAGAGGGC AATCTTGAAT
  GTCCTTCCTC AGGAGCTATC TAACTTTTAA AAATTCTTAT TGATATTGTT ATTGAGGTGC
  TCTGGTGCAC ATATGAAGAT CAGAGGACAA CAATGAGAAA TGGAGAAATG GCCCTTATGG
  AGGCTCTGGG AGTAAGATAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	PWK/PhJ	QSi3/Ianm	SPRET/EiJ	SWR/J
ss355467428	MGP_WTSI_2_121334558	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	PWK/PhJ	QSi3/Ianm	SPRET/EiJ	SWR/J
rs221647622					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355467428	MGP_WTSI_2_121334558	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121339303 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr563842	regulatory region 563842			1804 bp distal
Rr563843	regulatory region 563843			657 bp proximal
Tssr19778	transcription start site region 19778			997 bp upstream
Tssr19779	transcription start site region 19779			1034 bp upstream
Wdr76	WD repeat domain 76			Intron
				mRNA-UTR