rs221573410 SNP Detail

Summary

• ID
  rs221573410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86760703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTAACGAGA TCTGACTCCC TCTTCTGGAG TGTCTGAAGA
  CAGCTACAAT GTACTTACAT ATAATAAATA AATAAATCTT TAAAAAAAAA AAAAAAAAAA
  R
  AAAGAAATGG CAGGTAGCGG AAGCTTCGGT GCTACCACTG TAAGGAGAAA GAGATGGAGT
  CCATCAGTTC ACTCGGGCAA ATGAAGTTCT AAAAGCCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	I/LnJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	ST/bJ	SWR/J
ss369092389	MGP_WTSI_6_86733715	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	G	G	G	G	G	G	G	G	A	G	A	G	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	I/LnJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	ST/bJ	SWR/J
rs221573410					SNP	G	A	G	G	G	G	G	G	G	G	G	A	G	A	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369092389	MGP_WTSI_6_86733715	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86760703 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Rr633511	regulatory region 633511	992 bp distal
Rr633512	regulatory region 633512	1065 bp proximal
Tssr57506	transcription start site region 57506	1341 bp upstream
Tssr57507	transcription start site region 57507	1766 bp upstream
Tssr61859	transcription start site region 61859	184 bp upstream
Tssr61860	transcription start site region 61860	1798 bp downstream
Tssr61861	transcription start site region 61861	1826 bp downstream