rs221538063 SNP Detail

Summary

• ID
  rs221538063
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132570617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCATCTT GCGTCTCCCC
  CTCCCATTTG GCGGGTCTGA AGCACGCCGG GAAACTAAGA GCTCGGGAGG GAAGAGGCGG
  CATCCCAGCA GCCTGTGCGC AGCGCGTGCG TGCGCACGCG CAACGCAAGG ACGCTCTCCT
  GGGAGCGCCT CTGGCGGAGG GCATCAGGGG CTGGGTTTGA AGTCTGCAGT GTTTGCTGGA
  R
  AGGCTGGGGG CGGGTGTCTC CTTGGTCACG GGGTCAGGAG TGGTTTGTAC CTTGATGCGG
  CTTTCGCGCT GCGTTTTCCG CCAGAAACCC TAGAGCTCTG CAATCTGCAT TAACTCCCAG
  CTACCCACCC CCTCGGGCTT CATCTAGCGA TAAGCAGGTG ATGGCTAGAG ATAAGAAGTG
  ATGGCTTTTT TTTTCCCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336778	CHEV_4_132399221	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221538063					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132570617 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14975	CpG island 14975	within coordinates
Ppp1r8	protein phosphatase 1, regulatory subunit 8	137 bp upstream
Rr367719	regulatory region 367719	34 bp downstream
Rr367720	regulatory region 367720	within coordinates
Rr601096	regulatory region 601096	194 bp distal
Rr601097	regulatory region 601097	182 bp distal
Rr601098	regulatory region 601098	within coordinates
Rr601099	regulatory region 601099	134 bp proximal
Tssr43718	transcription start site region 43718	361 bp upstream
Tssr43719	transcription start site region 43719	122 bp upstream