rs221527021 SNP Detail

Summary

• ID
  rs221527021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:81846607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGGAGT GATTGCAGGG
  GTGATAACAC TGACACTTGG CAGCCTGCAA CCAGTGTCTG GTTTAGCAAG TGAAAGAGAC
  CATCATTCAC AGGAGCCATA CATGGGCGGC TGCTGCAGGG GCCACTGTGA GATCCATATC
  TTAGAGAAGG TCTGGCAATC ATCTTCTAAT CGTTTACAAT TAGGTCTACA AGTATTTAAA
  R
  TACTCTTGCT CTAACTACTT GGCAACCAAA TAGATTGATC GTTACAAATC CCAAGCATGC
  TGTAGATCCC AGACAACATA CACCGTCTTA CGGAAGAACT CCATGTCATT TGATTCCCTA
  TTCTGTTAAA GTGATTCCTT ATGTTCATGT TTTCCTGTGC TAGTCCGTGT ACCATTTGTG
  TATCTGCTCC ACTTGATCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320817237	CHEV_3_81743222	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221527021					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81846607 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ctso	cathepsin O			Intron
				Noncoding-Transcript-Variant
Rr578733	regulatory region 578733			21 bp distal