rs221526725 SNP Detail

Summary

• ID
  rs221526725
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172342382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGAAAA GGGGGGTTTT
  TGAAGACAGA TGGAACGCAG CTAGCAGTTT AAGTGAAGTA ATTCGTGCAT TTAAGCATTT
  ATTTATGTTT TGAGCCTTAT TTTGATTTGA AAAGAATTTA GGGTGGTTTG GAGAATTTAA
  GTGTTCCAGG AAAGGCGGCG AGTGATGCAA CTTTCAAGCT TCATACAGTT TAGAAAAAAA
  M
  AAAAAAACAA AAAAACAAAA AAACAAAAAA AACAAAAGGA TCCTTTCCTG AGTCCTGATG
  TTTGTGCTGC ACTAAGGACA AGACCCCCGA GTGGCTGAGG GGAAGAAAAC ACTGCAAACT
  GATTTTCAAG CACGATCTTG TCTTCATACC CCTATCCCAA TCCCCCAGGG ACTGGGCCTA
  TCTTTCTTTC CCAGGAGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320125809	CHEV_1_174444946	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221526725					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172342382 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	within coordinates
Gm57108	predicted gene, 57108	801 bp upstream
Gm70635	predicted gene, 70635	within coordinates
Rr396590	regulatory region 396590	1578 bp downstream
Rr396591	regulatory region 396591	481 bp downstream
Rr423601	regulatory region 423601	1613 bp distal
Rr423602	regulatory region 423602	1780 bp distal
Rr423603	regulatory region 423603	812 bp distal
Rr423604	regulatory region 423604	677 bp distal
Rr423605	regulatory region 423605	141 bp distal
Rr423606	regulatory region 423606	93 bp proximal
Tssr302	transcription start site region 302	803 bp upstream
Tssr10235	transcription start site region 10235	1558 bp downstream
Tssr10236	transcription start site region 10236	668 bp downstream
Tssr15228	transcription start site region 15228	835 bp upstream