rs221519263 SNP Detail

Summary

• ID
  rs221519263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109984527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATCTTGA GGCGAGGGAT
  CTCAGAGTCA AGGGTAGACA CACTGTCTTT CCATCATGAT ACCATCTGAA AGAAGGAAGG
  AAGGTCAGAC CCTCCTGTGA GGGTCACCTG GGTGTCAAAC CTCAAGACAG CCTCTGAAAT
  ATGCTTTTCC ACCTTGGTGT CTTTGGGAAA CACACTCCAC CATGGTGGCT TTCTGGACAG
  Y
  TTCTTCCCAG GACTTTGGTG AGTGGCAGGT TTCTGTATTG ATGCTGCCAG ATGGGTCCAC
  AGATCAACCA TGCTTTTATC TGTTTGATCA TCCATTGCTC ATTTGCTTAT TCACTGAGCC
  CTAATGAGAT GTGCCTGCAG TAGACCCTTA CAGGTGTAGA CTCTGTTACT AGGTGGGGTG
  GGATCTGTAC AATGGGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255075	CHEV_4_109799935	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221519263					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109984527 () rs orientation: forward

Symbol	Name	Function Class
Rr597401	regulatory region 597401	1351 bp distal
Rr597402	regulatory region 597402	624 bp proximal
Rr597403	regulatory region 597403	1639 bp proximal
Rr597404	regulatory region 597404	1750 bp proximal