rs221509338 SNP Detail

Summary

• ID
  rs221509338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135898839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGCTAC ACCGAGAAAC
  CCTGTCTCAC AAAAACAAAA ACAAAAACAA AAACAAACAA ACAAAAATTT GTGTAGAAGA
  AACCTGGAGG TGTTTGATTC AGGAAGGAAG AGTGCTGGGT CCTGTTGGGG AAAATGACCT
  GACAAACTCT GGACCCTCAC CCACGCTGTG CCTGTCAAGG GCGGGGCAGA GTTTGGGAGA
  R
  TGGAAAGGAG CTCTTTACTA GAACAAAGAC TCCCGACCTG GACTGTCCTA CATTTGACTG
  CCAATTCTCA GATCAGCGAA TCTGTGAATG ACCCGAGGCA CAATATCCCG CCCCTCCGAC
  TCCCTGGTCT TACCCATCCC ACTTCTCCGG ATTGATGGGA TAAATTAAAC AACATAACAT
  ATATAATGGT CTAATCTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363384765	MGP_WTSI_4_135727443	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221509338					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363384765	MGP_WTSI_4_135727443	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135898839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	425 bp proximal
E2f2	E2F transcription factor 2	866 bp upstream
Rr367754	regulatory region 367754	540 bp upstream
Rr602302	regulatory region 602302	376 bp proximal
Tssr39670	transcription start site region 39670	738 bp upstream
Tssr39671	transcription start site region 39671	839 bp upstream
Tssr39672	transcription start site region 39672	868 bp upstream
Tssr39673	transcription start site region 39673	900 bp upstream
Tssr39674	transcription start site region 39674	1030 bp upstream
Tssr39675	transcription start site region 39675	1138 bp upstream
Tssr39676	transcription start site region 39676	1322 bp upstream
Tssr39677	transcription start site region 39677	1417 bp upstream
Tssr39678	transcription start site region 39678	1639 bp upstream
Tssr44029	transcription start site region 44029	790 bp downstream
Tssr44030	transcription start site region 44030	1073 bp downstream
Tssr44031	transcription start site region 44031	1510 bp downstream