rs221499994 SNP Detail

Summary

• ID
  rs221499994
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83975179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCACAGA AATCACCTGA
  GAGCTTTGAT AAGGTACGAA CCAGCACACA GAGACATAAA CTTTTAATTA ATTCTTTGAC
  AATTTCATAC AATATATTTG AATCCTATTC ATTCTTCCAA CTCCTCTCAG ATTCTCCCCC
  ACCCAGCCCT ACCTACCCAA CCTCCTTGTA TCCTCCTTTA AAAACAAAAA ACAAAAAAAA
  M
  CTCATCAACT CCAATGTATG CAACCCACAT ACTCCAGGGG TGCACTCATC CACTGGAGCA
  TAACCTACCA AGGCCTTCAC CCTTCCCTCC CTCCCTACCC CCTCCCTCCC TTCCAGCAGC
  CTCCAATTGC CAATAGCTCC TCAAGTGGGA ATGGGACCTG TGCCCACCTC ACCTCTCTGT
  ATTGGAATCT TGTCTGGCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320822189	CHEV_3_83871794	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221499994					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83975179 () rs orientation: forward

Symbol	Name	Function Class
Gm56775	predicted gene, 56775	within coordinates
Rr397735	regulatory region 397735	1305 bp upstream
Rr578973	regulatory region 578973	1590 bp distal
Rr578974	regulatory region 578974	1283 bp proximal
Rr578975	regulatory region 578975	1569 bp proximal