rs221485176 SNP Detail

Summary

• ID
  rs221485176
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151952085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGATCATC TAATATAGAT
  TGAATGGGAT TAAAATGGCA AGGATGAAGG AGAAAAGGAC AGCAGAGAAG AGAATGAAAT
  GAGAGAAGGA GCAGAAAGCA GGGAAATGAT AGGGGAAATT CCGTTTTGTT CTTTTTTTTT
  TTCCTGAGTC TTTTTCAAAG TTATTTATTT TATGTATATA TGCTCTCTTC AGACACACTA
  S
  AAGAGGGCAC CGGATCCCAT TACAGATGGT TGTGAGCCAC CATGTGGTTG CTGGGTTTTG
  AACTCAGGAC CTCTGGAAGA GCAGTCAGTG CTCTTAACAG CTAAACCATC TCTCCACCCC
  ACCCCTTTTT TGTTCTTGAC ACTGAGATCT GGCCTAAAGA AATGTATCTT TCCAGAGAGG
  GATGGCAGTT TCCAGCCTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360262402	MGP_WTSI_3_151909412	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221485176					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360262402	MGP_WTSI_3_151909412	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151952085 () rs orientation: forward

Symbol	Name	Function Class
Nexn	nexilin	Intron
Rr587498	regulatory region 587498	799 bp distal
Rr587499	regulatory region 587499	743 bp distal
Rr587500	regulatory region 587500	577 bp distal
Rr587501	regulatory region 587501	285 bp distal
Rr587502	regulatory region 587502	within coordinates
Tssr36179	transcription start site region 36179	660 bp downstream
Tssr36180	transcription start site region 36180	738 bp downstream
Tssr36181	transcription start site region 36181	762 bp downstream
Tssr36182	transcription start site region 36182	777 bp downstream
Tssr36183	transcription start site region 36183	805 bp downstream
Tssr36184	transcription start site region 36184	1508 bp downstream
Tssr36185	transcription start site region 36185	1524 bp downstream
Tssr36186	transcription start site region 36186	1632 bp downstream
Tssr36187	transcription start site region 36187	1809 bp downstream
Tssr36188	transcription start site region 36188	1877 bp downstream
Tssr36189	transcription start site region 36189	1903 bp downstream
Tssr36190	transcription start site region 36190	1981 bp downstream