rs221450749 SNP Detail

Summary

• ID
  rs221450749
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75773985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTGCAT TGTGGATAGT
  CAAGGACACT CCTAAGCAGG GAGACTGGAG AGGTATTTGC AAGTGGTCCC CTGGGACCTA
  AAACCTCAAG AGGAGCCTAT TGTCTCTGCC CACAGGAACA TCTGTGTCTT TTCTCTTCTT
  ATTTTGTCCT TGAGTTCTTT TTTCTGCACT CAAATGGGGT GGGGTGGGGA TCTCAAGCGC
  K
  CGGGGAGTGG GGGGGGGGCA ACTCTCACAT CCTGTCTGTG ACCTTTCCCT TCTTGCTGAT
  GTAACTTCTT AGTAACCGCC AGATCCTGGA AGAGGAGTCC TGCTGGATTG CTGTCTGTTT
  GCAGTTGATC ATAAAGCAGA GGTCAGGGCC AGTCCCCTTG GATTCAAGTC CAGCTTGGCT
  GTGGTGTACC GGCTCATAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380934145	MGP_WTSI_10_75400896	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221450749					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380934145	MGP_WTSI_10_75400896	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75773985 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10			404 bp downstream
Gm867	predicted gene 867			mRNA-UTR
				Noncoding-Transcript-Variant
Rr384937	regulatory region 384937			within coordinates
Rr434185	regulatory region 434185			within coordinates
Tssr94151	transcription start site region 94151			1892 bp downstream
Tssr94152	transcription start site region 94152			1859 bp downstream
Tssr94153	transcription start site region 94153			1829 bp downstream
Tssr94154	transcription start site region 94154			1818 bp downstream
Tssr94155	transcription start site region 94155			1734 bp downstream
Tssr94156	transcription start site region 94156			977 bp downstream
Tssr94157	transcription start site region 94157			956 bp downstream
Tssr94158	transcription start site region 94158			818 bp downstream
Tssr98154	transcription start site region 98154			237 bp downstream
Tssr98155	transcription start site region 98155			1813 bp downstream
Tssr98156	transcription start site region 98156			1853 bp downstream
Tssr98157	transcription start site region 98157			1889 bp downstream