rs221437860 SNP Detail

Summary

• ID
  rs221437860
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151964014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGTGAGCT GCAAGCTAAA GGCCAGAGGC
  ACCTCAGCCC TCTTGAGACA TCCTCCCATC TAAGGGGTCC AGAGCACTTG TGTTTCTGTG
  CTTGAAACCT AGCTCGCACA GTACCACCCA CTAGAACGCT GAGCGCCTGA TCTCGGAAGT
  W
  CTAGTGCCAG CATTTAATGG CTTTAAATGT GCCGGGCTGT TCCATCCCAG GGACCCTTCC
  TACTTGTTAA GTAGGGGGAC AAAAACAGAT GATGGAGTCC AGATGAATTT CCAAATCCCA
  TCAATTGGAT TGCTAAAAAC ACTGCACATA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320062291	CHEV_1_153935393	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221437860					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151964014 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	Intron
Cpgi853	CpG island 853	1345 bp proximal
Rr420417	regulatory region 420417	269 bp proximal
Rr420418	regulatory region 420418	1852 bp proximal
Tssr14207	transcription start site region 14207	1882 bp downstream
Tssr14208	transcription start site region 14208	1918 bp downstream
Tssr14209	transcription start site region 14209	1978 bp downstream
Tssr14210	transcription start site region 14210	1996 bp downstream