rs221435823 SNP Detail

Summary

• ID
  rs221435823
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133251018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCCACGT GGGCCGCGCA
  GGGGGTGCTG TCTCGCAGAG CCCAGAGGAG CGGTGTCACC GAGCCCCTGC TTGTCACTCG
  AAAGAATTAA GCCAGCAGTT TCTAATGTTC AAGGCGCCCC CGTAAGTTCC TCTATTTTGC
  ACAAATTTCC ACTCCGTACG GTAAAGTAAT GAAGAAACCG CCTTGTGGGA AGCTGAATTC
  M
  GAACAAGCAG AGAGCGCTCA GTTTTCCCTG AAGTTCAAGG CTTGTGCGCA CCAGCTCTTC
  TGCTGGCACT TCCGTTTTTT AAACTTACAT TTTAAATGTT CCTTTTGGTA ATTATTAACT
  TTTGAAGATG AGATCGAGGC AAATTCATAG GAATCATGAG ACAGTAGTTT AGGAAATTTG
  TGCTCACACA TCCACCCACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359791703	MGP_WTSI_3_133208221	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221435823					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359791703	MGP_WTSI_3_133208221	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133251018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13849	CpG island 13849	132 bp distal
Gm42567	predicted gene 42567	within coordinates
Rr585564	regulatory region 585564	1648 bp distal
Rr585565	regulatory region 585565	900 bp distal
Rr585566	regulatory region 585566	1622 bp distal
Rr585567	regulatory region 585567	172 bp distal
Rr585568	regulatory region 585568	within coordinates
Tet2	tet methylcytosine dioxygenase 2	136 bp upstream
Tssr35764	transcription start site region 35764	993 bp upstream
Tssr35765	transcription start site region 35765	944 bp upstream
Tssr35766	transcription start site region 35766	845 bp upstream
Tssr35767	transcription start site region 35767	591 bp upstream
Tssr35768	transcription start site region 35768	102 bp upstream
Tssr35769	transcription start site region 35769	60 bp downstream