rs221427965 SNP Detail

Summary

• ID
  rs221427965
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139222351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGAAAC TCCATAATAA
  GAGCAACATG GATTACAGAC ACAGCTAGTG GGAGCGCACG TCCTCCTCCT TCCTCAGTGG
  AATGCAGGAG ACAAGTGTAG ACAGAGGGAA CTGAGGAAGG AGGGCATTTC TGAAAATAAT
  GAGCTCAGAG ACACTACTTC CTTTTATCAT AAGCAATGAG TTCACTCTTG TGGATAGAGC
  W
  AGAGCTTAAA ACTAGAATCA AACCTGCCTA GAGCCAATCC GTACCCTTGC CATCTGTATA
  GCCAGGGGCA GGCCACCCAA GCCAAGTTAA TTATCTCATG TGTAAGGTGG AGTTGTAAAG
  CACCTTCAAA GATAGCTCTG TGAGAATTAA ACAAGATACT TTATAAACGA TACCTATTTT
  CCTGGCCTTT AATAAGTATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320526996	CHEV_2_139206167	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221427965					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139222351 () rs orientation: forward

Symbol	Name	Function Class
Rr566017	regulatory region 566017	1253 bp proximal
Rr566018	regulatory region 566018	1415 bp proximal