rs221402385 SNP Detail

Summary

• ID
  rs221402385
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114441940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATAACA TCTAATACAA
  ACAAACATAT ATGCAGAGGG CTTAGGTCAG ACTCAAGGAA TCTTCCGGAT TCTTAAATTA
  GTCTTTTGAG TCCCTGTTAT CTCAGGTAAA TTGATACTGT TGGTTTTCTT GTGGTATCTT
  TGACTCCTGA CTTCAGCAAT GTTTCCTCAC AGTCTGTTTC ACTCATTGTC CAAGTTCCAC
  S
  TAAAGTTTTT TTCCCAGTCT GACACTTGTA GTGACTCCTT CTCAAGAAAG AAAAGCTTTT
  CTATTAGTAA TTAATCTATG TGCATAGAAA TTAATAAAAA GTATCATTAC TAAATATATA
  AACACACACT ACACATACAC ACACAAACAA GCTAAAACCC AAACATTTAA CTTATTTCCC
  TACACCTTAG CATTATACAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss387436377	MGP_WTSI_12_115716531	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	G	G	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs221402385					SNP	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	G	G	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387436377	MGP_WTSI_12_115716531	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114441940 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv10-1	immunoglobulin heavy variable 10-1	687 bp downstream
Tssr3975	transcription start site region 3975	1171 bp downstream
Tssr118082	transcription start site region 118082	1186 bp downstream