rs221388976 SNP Detail

Summary

• ID
  rs221388976
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36118304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGAAGCT CTTTGGCCAA
  CAACTCAATT GGGTATAACC CAGGCTTGCT ACTGGAAGCT CTGTTTGGTA ACGAGAGATG
  GAGAGTTACC TCCCCATTTT TGGAGACATC ATTAAAATCA CTTTCATGTA TTTTAGTTAG
  TTCCCACTAC ATTAGGTGAT TTATTCCATG TTCTATTGCT GTGAAGAGAC ATTGTGATCA
  R
  GGTGACTCTT AAGAAAGAAA GCAACACTGG CAGGACACAT TCGTGTGAAC GGGACTCCTG
  GGTCACCTGG AGATCTCAGA TCGATGGAAC AGAGGCTACA GTACTGACGC TAACCTTTCA
  AGAGGCAGTC TGTGGGCTAG CAAGACGGCT TAGTGAGTGA AGTCGCTTGC CACAAAGCCT
  GGAGATCCGG GTCCAATACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357550844	MGP_WTSI_3_35963077	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221388976					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357550844	MGP_WTSI_3_35963077	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36118304 () rs orientation: forward

Symbol	Name	Function Class
Acad9	acyl-Coenzyme A dehydrogenase family, member 9	1824 bp upstream
Cpgi13079	CpG island 13079	1713 bp proximal
Rr397642	regulatory region 397642	391 bp upstream
Rr575304	regulatory region 575304	394 bp proximal
Rr575305	regulatory region 575305	1026 bp proximal
Rr575306	regulatory region 575306	1206 bp proximal
Rr575307	regulatory region 575307	1334 bp proximal
Tssr28859	transcription start site region 28859	1829 bp upstream
Tssr28860	transcription start site region 28860	1891 bp upstream
Tssr28861	transcription start site region 28861	1909 bp upstream
Tssr28862	transcription start site region 28862	1956 bp upstream