rs221378160 SNP Detail

Summary

• ID
  rs221378160
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59784648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccccgactc aaaagcaaac aaaCAAAAGA
  GTGAACGCCA CACCAAGATG CTACTGGAAG TTACCCTATG CTGCATAGCC TCACGCTAAA
  TCCAGACGTT TACCTTAAGA CGTAAAAGCG TTTGCCAGGC GGTGGTGGCG TGGGGGGGGG
  K
  GGGggggggc agagccaggc atagctctat gaattcaagg ccaaccttca aagcgagttc
  caggacagcc agggctaccc agagaaaccc tatttgcaaa caaacaaaCA AATAAACAGA
  AATGCAAAAG ACATAAATAT GTTTTAAGGT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141381	CHEV_4_59797520	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221378160					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59784648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14350	CpG island 14350	540 bp distal
Inip	INTS3 and NABP interacting protein	Intron
Rr376572	regulatory region 376572	337 bp upstream
Rr398295	regulatory region 398295	565 bp downstream
Rr593135	regulatory region 593135	851 bp distal
Rr593136	regulatory region 593136	292 bp distal
Rr593137	regulatory region 593137	612 bp distal
Rr593138	regulatory region 593138	1815 bp proximal
Tssr41950	transcription start site region 41950	772 bp upstream