rs221347331 SNP Detail

Summary

• ID
  rs221347331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162725443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAAAATA CACAATAAAG
  AGGTTCACAG CGGTTTTACT AGAAAACCAG ATAACCAGAA AAGCTCAGTA GGCAAACATG
  GCTTAATTTT CAGAGAAAAA TAAAGTCAGT AGTGATAGGG GTCCATTCTC TGAAGAAGCA
  CTTTGCTCAA TGATTAAAGG TGATGACATA AATATAATTC TGTTTACTTC TATTTTATAA
  R
  GTGCTCCCTA ATATTAGCAT ATTACCTAGC TGGCTTGTCG GACAATGATA AAAACACGGG
  CTGTTTTGCT TTAGCTGGAT TTTAAAGAGA AGGTTCCCTA CATCCCTGGA TTGATCACAC
  AGGTTGGCAC AGCATTGACC TGGGAGAGAT GCCAGCCTGA GTTCATTTCC TGGTTAGCTG
  CATAAGTAAA TAAAAATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352179724	MGP_WTSI_1_164828005	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221347331					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352179724	MGP_WTSI_1_164828005	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162725443 () rs orientation: forward

Symbol	Name	Function Class
Fmo2	flavin containing monooxygenase 2	Intron
Rr422037	regulatory region 422037	1538 bp distal
Rr422038	regulatory region 422038	1819 bp distal
Rr422039	regulatory region 422039	781 bp proximal
Tssr14684	transcription start site region 14684	443 bp downstream
Tssr14685	transcription start site region 14685	456 bp downstream
Tssr14686	transcription start site region 14686	475 bp downstream
Tssr14687	transcription start site region 14687	502 bp downstream
Tssr14688	transcription start site region 14688	521 bp downstream
Tssr14689	transcription start site region 14689	611 bp downstream
Tssr14690	transcription start site region 14690	837 bp downstream
Tssr14691	transcription start site region 14691	881 bp downstream