rs221345005 SNP Detail

Summary

• ID
  rs221345005
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141460897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGCAAGA GGAACACAGA
  TTTGAAATCA ACCTGGTTTG AAGCTGCAGA CTAAGTTCCA AGACAGCCAG AGTTAAACAG
  TATCTCAGAA AATAAAGAGG AGGAAGCAGT ACCCGCGTCC TTCTTGGAAA ACTGATTATA
  AATGTGAAGG AATTCCAAAG CTGAGGCTAT AAAGAAGTCA GGCTTGACAA CTCAAGCGTA
  T
  AATCCCAGCA TTCTGGAGGG AGAGGCAAGC TGGTTTTGAG TCCGAGGCTA GCCTGGGCTC
  CAAAATGAAT TCCAAGCCAT CTTGAACCAC ACAGAGAGGG GAGAGCCTGT TTTATAAAGC
  CAAAGTTCAA AACTGTTTGA GAGTATAAAG AAACAACTTT ATTTATTTTT TTTTAAAGAT
  TTATTTATTA TTATATGTAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321389364	CHEV_4_141289501	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221345005					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141460897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15242	CpG island 15242	1330 bp proximal
Gm34863	predicted gene, 34863	within coordinates
Rr603869	regulatory region 603869	1114 bp distal
Rr603870	regulatory region 603870	1066 bp proximal
Rr603871	regulatory region 603871	1567 bp proximal