rs221329920 SNP Detail

Summary

• ID
  rs221329920
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148693389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCCTGC AGTTCAACGA
  AAGGAAAAAA CTTTGCTGGT CCCAAGTGCA AGAGTCCCGC ATACTAGGGA CTCCTTCTCG
  CTGAGGATCT CCCCCGTCCG TGTGGCGGAG TCTCGGATCC AGAAGCCCAC GCCCGCGACC
  CCAAAGGTCC CCCTAGCCTC GCGCTCCTCC CACGACTCCT TCTCCCGGTT GCTTTCAACC
  K
  GAGGCTCGCG CCAGACCCAG CAGAATCCCC ACCCCAAAGG CAGCCCGGAG CCCACGCCCC
  TTAACTTCTG CTGCAGGCCC AGCGCGGCCC GCTGCTGCCC TCTCACTGCG GGTCCGGGAG
  CTTCTCTGCC CTAGCTCTGG CCCGCCTAGT CCCAGGGCCC CGCCACCCTC GGGCTCTGCG
  CCCCGCTCCC CTGGCCCCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360182843	MGP_WTSI_3_148650717	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221329920					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360182843	MGP_WTSI_3_148650717	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148693389 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Cpgi13930	CpG island 13930	within coordinates
Gm43573	predicted gene 43573	within coordinates
Rr587240	regulatory region 587240	109 bp distal
Rr587241	regulatory region 587241	892 bp proximal
Rr587242	regulatory region 587242	1564 bp proximal
Tssr36077	transcription start site region 36077	1341 bp downstream
Tssr36078	transcription start site region 36078	1349 bp downstream
Tssr36079	transcription start site region 36079	1595 bp downstream
Tssr36080	transcription start site region 36080	1625 bp downstream
Tssr36081	transcription start site region 36081	1652 bp downstream
Tssr36082	transcription start site region 36082	1690 bp downstream
Tssr36083	transcription start site region 36083	1760 bp downstream
Tssr36084	transcription start site region 36084	1779 bp downstream
Tssr36085	transcription start site region 36085	1803 bp downstream
Tssr36086	transcription start site region 36086	1959 bp downstream