rs221311827 SNP Detail

Summary

• ID
  rs221311827
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113302277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTAAGT AAGAGCTCAC
  ATGTCCTATG TACTCTCAGG CACTGCCCTA AGTACCTAGA AATACATAAA TTGTGTCTAA
  TCCCTGCAAT AACTATGGAT GGCTAATAAT ACGCAGCTAT CTCCACAGTG ACAGGACCAT
  ACTAAGTACC TTTAGATATA CTGTTGTGCA ATCTTTACAG TAATTATGGG GTGTGTTAAT
  W
  ACAGGTTGTT TACCTCAGAT GCTAAGGTTT AGAAAAATTA ACTCGCCAAA GTTCCTACAA
  CTAAGAAGTT GGAGAGCTAG GACTTAAACC CAGGTCTCTT TGTCTGGAAA GGTGTCTTTT
  CAGCTAGCAC CTAAGACCAG ATGAGTCCAT TACTGCCATC TTATGGGATT CAGTTGCTTC
  AAGTCCTTTG TTAGGACTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369709920	MGP_WTSI_6_113275310	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221311827					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369709920	MGP_WTSI_6_113275310	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113302277 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	456 bp downstream
Cpgi17839	CpG island 17839	950 bp proximal
Gm15492	predicted gene 15492	within coordinates
Ogg1	8-oxoguanine DNA-glycosylase 1	1682 bp upstream
Rr399830	regulatory region 399830	1269 bp upstream
Rr636489	regulatory region 636489	667 bp proximal
Rr636490	regulatory region 636490	1406 bp proximal
Tssr58194	transcription start site region 58194	1674 bp upstream
Tssr58195	transcription start site region 58195	1703 bp upstream
Tssr58196	transcription start site region 58196	1909 bp upstream
Tssr58197	transcription start site region 58197	1927 bp upstream
Tssr62435	transcription start site region 62435	1319 bp downstream
Tssr62436	transcription start site region 62436	1410 bp downstream