rs221261380 SNP Detail

Summary

• ID
  rs221261380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:117977664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGACAG GCTGCGGTGC
  GCGCACTGCG GGGACTCTGC CTGCAGCCTC CTGAACAAAG CTCCCGCGGG CTCCGCCCAC
  CGCAGCTCCG GTATCCTCAT TGGCCAGCTC TTCGCCCGCC ATTAGGGAGC GGGGCCGTGC
  CCTTACGAGT GCTGGTTGGT CTAATCGTAA TGACGGTGAG GGCTGCCATT GGTCTTTAGG
  Y
  CTCAAAATGG GCGGAGCAAG GCCGAGAGGC GGGGCGGGAG GGCGGCGCGG AGTGCGCCGG
  CGCGTCGTCG GGGACGCCGG GTCCAGGATC TTGCTAGGGA ACCAGTGTTG TCGCGTCGTC
  CCGCCCCCTC GGGGCTTTTG CTCCCGTTAA CTGTCGGCGG GGCAGGCTCC GCAGCGCAGG
  GCGACATGCC GGTGCGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323501702	CHEV_10_117578815	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221261380					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117977664 () rs orientation: forward

Symbol	Name	Function Class
Mdm1	MDM1 nuclear protein	Intron
Rr402280	regulatory region 402280	within coordinates
Rr439702	regulatory region 439702	within coordinates
Rr439703	regulatory region 439703	197 bp proximal
Tssr95938	transcription start site region 95938	231 bp downstream
Tssr95939	transcription start site region 95939	226 bp downstream
Tssr95940	transcription start site region 95940	200 bp downstream
Tssr95941	transcription start site region 95941	194 bp downstream
Tssr95942	transcription start site region 95942	43 bp upstream
Tssr95943	transcription start site region 95943	126 bp upstream
Tssr95944	transcription start site region 95944	144 bp upstream
Tssr95945	transcription start site region 95945	158 bp upstream
Tssr99498	transcription start site region 99498	149 bp upstream