rs221239126 SNP Detail

Summary

• ID
  rs221239126
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76235397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGATAATG TCTGCATATA CCAGGCGTCA
  TTCATATGTA CAAAGGATGG AATGGAAACA CACCATCACT AAGTGCTTAT GTATGCAGCA
  TTCACAGAAT GCACAACCAG GATCCCCATT AAACCTCACA AGAAGGTTTA AGAGCCATGA
  R
  CAGGTCAGAG AAACAGAGAA AATGACTCTA GGTAAGCAGA GGCAAGACGA CAGAATGTAA
  ATTAAGCCTC CTTCTTGGTG CCACATGCTA TTCTAGAGAG AACATTTGGT TTAACAATTG
  TGTACAAGCC TACATTCCCA CTGAACATGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170475	CHEV_4_75963064	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221239126					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76235397 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594082	regulatory region 594082			771 bp proximal
Rr594083	regulatory region 594083			865 bp proximal