rs221232998 SNP Detail

Summary

• ID
  rs221232998
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5509704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGAGTAC GAAAGGTCGG
  GGCTCTCCTG TTGCATCCTT TCTTCTGCCC TTCACACACT GGGCAGCACT ATCTTGTATT
  TTAATGTCCA GACTCCTGAA TGCATGCTGA TTCGAGCATT CTTTACTTTA ACAACGTGCT
  ATTTCAAGCA CAGGGATTAT TTTACTTTGC CAGGGCAGCA GTAACTTGTT TCTTGTTTGA
  M
  AATAAAGGGA CTTCCTGTCC CCACAGTTTT ATCTGGGTTG TTTGAGAAGA AGAAAAAAAA
  AAAAAAGCTC GTCTTACAGA AGCCAGGCAG GTACCACCTT GCTTTCCCAA GGCAGATGAA
  GTAGGTGAAA GGTTAGTCGC ACACCCACTC CAACAGCCCA GCCGGAACTG CCTGGCAGCT
  CAGTCAACAT GGGGAAGTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729369	CHEV_6_5459704	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221232998					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5509704 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626154	regulatory region 626154	1494 bp distal
Rr626155	regulatory region 626155	within coordinates
Tssr1775	transcription start site region 1775	1433 bp upstream
Tssr54862	transcription start site region 54862	1444 bp upstream