rs221185045 SNP Detail

Summary

• ID
  rs221185045
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116649370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAAG CGTGAGTGAA TGAGGATGAT
  CAGGATGCCT GAGTCCAGTT GCCCTGGATC CCAGGCTGAG AATGTCTGCT GCAGTGACTC
  TGAGAACCAT GCTGGCTGAG ATTTTCTTTG TCACTGACTT GGTGTGTGAC CTCAACTGTT
  K
  TGCCACCTCT AGGCCTTGAG TTAGCTAGTT GTAGTGGCAG CTGGTATAGA GTGTCCCTGG
  GGCAACTAGG GGACTATATC ACAGCCCATC TTCGCTACCG AAGGTCAAGC AAGGGGGTGG
  CAGGGCTCCA ATCCTATCTC AGGGTTTGTC CCAGGGGAAA TCCCATAGGC AGGAAGGAGA
  TTCGGGGAAC TACAAGTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369778450	MGP_WTSI_6_116622427	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221185045					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369778450	MGP_WTSI_6_116622427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116649370 () rs orientation: forward

Symbol	Name	Function Class
Gm67954	predicted gene, 67954	245 bp upstream
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr368159	regulatory region 368159	1367 bp upstream
Rr637230	regulatory region 637230	302 bp distal
Rr637232	regulatory region 637232	1149 bp distal
Rr637233	regulatory region 637233	within coordinates
Rr637234	regulatory region 637234	256 bp proximal
Rr637235	regulatory region 637235	745 bp proximal
Rr637236	regulatory region 637236	1343 bp proximal
Rr637237	regulatory region 637237	1390 bp proximal
Tssr58385	transcription start site region 58385	858 bp downstream
Tssr58386	transcription start site region 58386	571 bp downstream
Tssr58387	transcription start site region 58387	1503 bp upstream
Tssr62606	transcription start site region 62606	979 bp upstream
Tssr62607	transcription start site region 62607	30 bp downstream
Tssr62608	transcription start site region 62608	1362 bp downstream
Tssr62609	transcription start site region 62609	1381 bp downstream