rs221179102 SNP Detail

Summary

• ID
  rs221179102
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101531559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGCTAT CTCGTGTGTA
  ATTACTTCCT CTAGATTGAA AACATTCACT CCTGGAGGGG TGCTCCCATA GACCTAAGAA
  GAAAACACAA CTCACAAATC TCAGAAAGTT CCTGAAAATT TCAAGATTCA TGCTCCCCTA
  CCCTCAAGAC TATATAAGCA GTAACAATTT CAGGAGGTTC TGTGTAAATC TCCCTCAGGA
  W
  GCTCAGGGAG GCAGCTTTCA TGAGCTGTCA CCCCTGTTGG GTAGGTTTTG GTGTTGCACC
  TGACTTCCCC GTCATCCATA CTCCAGTAGG TAACTGCTCA CCTGCGCTCT GTAAGGAACC
  TCGATGCATT CGCTGGCTGG CTAAGCTAAC CTTGGGCAGG ATTGTTTCTT TGGTCCTTTG
  TTGGAATGCT GTGTAGGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321230913	CHEV_4_101346967	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221179102					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101531559 () rs orientation: forward

Symbol	Name	Function Class
Rr596196	regulatory region 596196	402 bp proximal
Rr596197	regulatory region 596197	1305 bp proximal