rs221156793 SNP Detail

Summary

• ID
  rs221156793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28075523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAGTGT CTGGAGACTC
  CCAAGTTGCC TGGTGCGGGG GGCCGGAGAT TCCAAATGGA GCCTAGAATT CTCACACGTC
  TTTAAAGCCT CTGTCCCAAA CCGGGAGGGT TCATATCTAT AATCCTAAAC ATTCATAGGG
  TTGAGGCTGG AGGATTGCCA GGAGTTGCTC GGGGTTCATA AGGATACCCA GTCTTCCCTT
  Y
  TTCCCTGCCC TCCCCTACAA ACAAACAAAA AGTCCATAAA GGGTGAGAGG GCTCAGCAAG
  TAAATGCGCT TGCCACGAAG GCATAAGACC TAGTTAGATC CCGGGACCCA CTTTGTGGAA
  GAGACCCGAT TCTTGACTAA CACTACACAT TTACAAGTCA GGCATGGTGA TCTGAGCTTG
  TTATCCCAGC AGGAGGTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858496	MGP_WTSI_7_29161117	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221156793					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858496	MGP_WTSI_7_29161117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28075523 () rs orientation: forward

Symbol	Name	Function Class
Gm73785	predicted gene, 73785	within coordinates
Gm73790	predicted gene, 73790	1938 bp downstream
Gm73803	predicted gene, 73803	526 bp upstream
Rr380568	regulatory region 380568	279 bp upstream
Rr400209	regulatory region 400209	166 bp downstream
Rr644238	regulatory region 644238	36 bp distal
Rr644239	regulatory region 644239	566 bp proximal
Rr644240	regulatory region 644240	1835 bp proximal
Tssr65460	transcription start site region 65460	306 bp downstream
Tssr65461	transcription start site region 65461	427 bp upstream
Tssr65462	transcription start site region 65462	628 bp upstream
Tssr65463	transcription start site region 65463	1388 bp upstream
Tssr65464	transcription start site region 65464	1898 bp upstream
Tssr71489	transcription start site region 71489	514 bp upstream
Tssr71490	transcription start site region 71490	872 bp downstream
Tssr71491	transcription start site region 71491	976 bp downstream
Tssr71492	transcription start site region 71492	1032 bp downstream
Tssr71493	transcription start site region 71493	1076 bp downstream
Tssr71494	transcription start site region 71494	1123 bp downstream
Tssr71495	transcription start site region 71495	1168 bp downstream
Tssr71496	transcription start site region 71496	1519 bp downstream
Tssr71497	transcription start site region 71497	1767 bp downstream
Tssr71498	transcription start site region 71498	1825 bp downstream
Tssr71499	transcription start site region 71499	1918 bp downstream
Tssr71500	transcription start site region 71500	1951 bp downstream
Tssr71501	transcription start site region 71501	1969 bp downstream
Zfp36	zinc finger protein 36	685 bp downstream