rs221088551 SNP Detail

Summary

• ID
  rs221088551
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132292334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gatgctggg aacaaaacct gggtcctttc
  caagagtgtc cagggcgctt aatccctgtg ccatctctcc atcctctagt cttagtcctt
  aaccctctct cagccttctg agtggtaggt atttctggcc tgTGATCAGG TGCTGGGACA
  T
  TCCAAGGGAA CCCCTCTTTT CTGAGAGTGA GATGGAGCCA TCTTAGCCTT AACTTCTggg
  aggcgatggt gaggacggga ggcaagggct tagaggtctg tgagcagacc tccatttgct
  ttattagctg tgtgactttg gagaagttat                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321334508	CHEV_4_132120938	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221088551					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132292334 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601015	regulatory region 601015	946 bp distal
Rr601016	regulatory region 601016	726 bp distal
Rr601017	regulatory region 601017	898 bp distal
Rr601018	regulatory region 601018	743 bp distal
Rr601019	regulatory region 601019	468 bp proximal
Tssr39381	transcription start site region 39381	1542 bp downstream
Tssr39382	transcription start site region 39382	1513 bp downstream
Tssr39383	transcription start site region 39383	1430 bp downstream
Tssr39384	transcription start site region 39384	1395 bp downstream
Tssr39385	transcription start site region 39385	1286 bp downstream
Tssr39386	transcription start site region 39386	947 bp downstream
Tssr39387	transcription start site region 39387	930 bp downstream
Tssr39388	transcription start site region 39388	813 bp downstream
Tssr39389	transcription start site region 39389	337 bp upstream