rs221057012 SNP Detail

Summary

• ID
  rs221057012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32304248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAGAGTG GTGAGAACAC
  AGTGGGGCCC CACAAGCAAA GGATAGTGCC ACATTGTCTG AACACCAGCT TCGGAGACCC
  TCCTAGTTGG TCCCTTTCCT TAGCTGGCTC AGGTTGCAAC CAATCATCCA AGCTGCTTCA
  AAAGGGGATA GGGAAGAAAG CCAAAGTCGG GGAGTGAAGA GCCAGAGAGA GCAGGCAGGG
  Y
  GTGGGGAGGG GTAGGAGCCA GGCAGCTGAG TTTGCATGCC AGCAAGCAAT CTCTCAGAGT
  AGGAGAATCT GACTCCTGGG AAAGACTGTG ATCTGTTTTC CCTCCAGACT GGGGTAACTC
  GGTCAATGAA ACTCAATCCT GATTGGTTGT GACATGAGGT CATAGACAGA GGCAGGGCAA
  TGTCAGAAGT TCATCTACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321777567	CHEV_6_32277313	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221057012					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32304248 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Rr628093	regulatory region 628093	within coordinates
Rr628094	regulatory region 628094	674 bp proximal
Rr628095	regulatory region 628095	967 bp proximal