rs221039583 SNP Detail

Summary

• ID
  rs221039583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:103278658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCTTTCT CTGGTGCAGA
  CAACAGCACA AACCCTGCAT CTTTTTGTCT GTCCTCATGT TTTATTCTCA GAATACTGAG
  AACACACCTT CAGAAACCTA AGTCAGACCC CAGGTCTGTC TGGTGCCTGG ATTATGAGAG
  ACTCTTGAGG GACGTGTGTT TAGGCTCTGC TGCTTACACA GCCTGCTACC TCATCTGCTA
  Y
  ACAGAACCAC GGGCTCCTCA CCTCAGGCTA GTGAGCTGGT GAGGAAGAGC TCGAGAAAGC
  AGACAGAAAG ACATCTCCTG GATGTCACTA ACAGGACTGA GCTGGGGAAG GGGCCCCCAG
  GGAAGCCTGT TTACTGAGGC TGTCCTCCTG TTGGGAAGTA CAGAAGTGCC CAGTCCGCTC
  TTCCCCTAAC AGAGTATATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321237110	CHEV_4_103094066	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221039583					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103278658 () rs orientation: forward

Symbol	Name	Function Class
Gm12718	predicted gene 12718	within coordinates
Rr596398	regulatory region 596398	136 bp proximal