rs220969885 SNP Detail

Summary

• ID
  rs220969885
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152631168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTGCTG TGCACCCTGG
  CCTGGCTCCC TCCTGGGGCT CATCGTCACT CTGAAAGGCT GCTTAAATCC AGAGAGCCGC
  TTGGCCAGCC CCTGCCTTAT TCTGTTACCC GTGTTTCTTC CCACTGGAGG CCGGCTCCTG
  CCAGGTAGCT GCCGGGCCCT TGGTGCACCA CAGTGCCACC CAGTGTTTAT TCTGGGGTCA
  G
  ACTGGATGGG CTTTGTTAAA GCTGATGTGT CTGAGAAGCT GGCCTCTTGC CTCATCTCCC
  CTTCAGTGTG GCAGGTGACA GCTCTGTCCC TGATGCCCTT CATGGACCTG CCCTTCTCCT
  CTTCCAGGGC CTCTCTGGGT GGGTCCCGAG CTGCCCTAAC CCTCAGGAGT CTGCTGGAGG
  TGTCCGTGGT TAGACCCCAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321435166	CHEV_4_151920820	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220969885					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152631168 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp4	nephronophthisis 4 (juvenile) homolog (human)			Intron
				Noncoding-Transcript-Variant
Rr605903	regulatory region 605903			within coordinates
Rr605904	regulatory region 605904			10 bp distal
Rr605905	regulatory region 605905			1076 bp proximal