rs220963405 SNP Detail

Summary

• ID
  rs220963405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132253773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGTGACTC TCAGTTCCAG CCACAGTTTG
  GTGGGGGGAA ACACAGGGAG ATTTTTAAAA ATACCAATGT CCAGGACCAA ATTGTTTTGA
  Tttttatttt gctgaggtac ggtcttactg tgttgctggc tggcctccaa ttctcttgac
  Y
  cagtcttctg aattctgagg tgtttgctac tacCGACAGC TATTTTTGTT TCTTCTTTGA
  TTAAAAATAT ATTTGTTTAA Tagccagatg tggtggtata accattaatt ccagcactca
  ggaagcagag gcaggtggag ctctatgaag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321334113	CHEV_4_132082377	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220963405					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132253773 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
Rr377208	regulatory region 377208	1042 bp downstream
Rr377209	regulatory region 377209	686 bp upstream
Rr601000	regulatory region 601000	1303 bp distal
Rr601001	regulatory region 601001	318 bp proximal
Rr601002	regulatory region 601002	410 bp proximal