rs220961491 SNP Detail

Summary

• ID
  rs220961491
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167261631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTGAGAC AGGGTCTTTT
  ATGTAGTCCC AGCTGGCTCT GGAACTTATT CTGTAAACCA GGCTGGCCTC AAACCCAGGA
  GATCCATCTG TCTCTGCCTC CAGAGTACTG GGATTAAAGG TACATGCCAC CACTCAGCCG
  GTTCAAGCCT TCTCAAGTTC TTTGTTTTTA AAAATTCCAT TTATTTGGGA TGTGTGTCTT
  R
  GGATTTCTAC TGCTTCAAGG AAACACCATG ATCAAACAAC TTGGGGAGAA AATGATTTAT
  TTGGCCATAA ACTTCCACAG CACGGTCCAT CATCAAAGGA AGTCAGGACA GGAACCCAAG
  CAGGGCAGGA ACCTGGAGGC AGGAGCTGAA GCAGAGGCCA TGGAAGGGTG CTGCTTACTG
  GTCTGCTCAA ACTGCTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356504881	MGP_WTSI_2_167245211	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220961491					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356504881	MGP_WTSI_2_167245211	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167261631 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12739	CpG island 12739	1407 bp proximal
Gm74973	predicted gene, 74973	1516 bp downstream
Rr397507	regulatory region 397507	1735 bp upstream
Rr570574	regulatory region 570574	1533 bp distal
Rr570575	regulatory region 570575	1805 bp distal
Rr570576	regulatory region 570576	664 bp distal
Rr570577	regulatory region 570577	74 bp distal
Rr570578	regulatory region 570578	326 bp distal
Rr570579	regulatory region 570579	284 bp distal
Rr570580	regulatory region 570580	802 bp proximal
Rr570581	regulatory region 570581	1758 bp proximal
Tssr21807	transcription start site region 21807	1981 bp upstream
Tssr21808	transcription start site region 21808	1995 bp upstream
Tssr27774	transcription start site region 27774	1740 bp downstream